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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70028813_70029443_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70028813 - 70029443
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TATTTTCTAATA
Flanking Amino Acid:
ETTLDAMIMDGNTMEVGAVA
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
61.5
0.36
1.6
72.55
33.2

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013943
70002399 - 70032549
30151
ENSAPLT00000041560
70006951 - 70032549
25599
ENSAPLT00000025711
70019551 - 70032549
12999