About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70029598_70031343_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
70029598 - 70031343
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCCGG
5'SS Class:
weak_major
3'SS Sequence:
GTGTTGATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGACCTTTAATT
Flanking Amino Acid:
TWAFRKATETAWRVLQLGGS
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
41.7
46.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.3
0.52
1
65.6
44.4
Minor 5ss
36.3
-1.6
3.2
47.8
47.7
Minor BPS
71.4
0.75
1.2
79.22
36.7

Associated Gene:

Gene:
AGA
Ensembl Gene ID:
ENSAPLG00000013364
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041560
70006951 - 70032549
25599
ENSAPLT00000025711
70019551 - 70032549
12999
ENSAPLT00000013943
70002399 - 70032549
30151