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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70062269_70064248_F

Intron Information:

Intron Rank:
144735
Intron Class:
major
Intron Phase:
Intron Coordinates:
70062269 - 70064248
Intron Length:
1980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATTATATACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
81.3
29.6
Minor 5ss
29.8
-2.3
2.6
30.2
36.8
Minor BPS
49.2
0.02
2
75.13
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028011
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033326
70062010 - 70168482
106473