About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70180092_70181469_R


Intron Information:

Intron Rank:
150204

Intron Class:
major

Intron Phase:

Intron Coordinates:
70180092 - 70181469

Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTAAGTTCA

5'SS Class:
strong_major

3'SS Sequence:
TGTTCATACACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTTTTTATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
86.7
0.86
0.9
77.7
33.5

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
71.8
0.49
1
65.9
39.1

Minor 5ss
40
-1.1
2.7
42.4
44.3

Minor BPS
67.3
0.52
1.5
77.16
33.3

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

70178486 - 70181519
3034