About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70294605_70301795_R

Intron Information:

Intron Rank:
143645
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70294605 - 70301795
Intron Length:
7191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTAC
5'SS Class:
weak_major
3'SS Sequence:
CTTTTGTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCCTATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
60.4
41.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77
0.61
0.9
70.4
40
Minor 5ss
48.6
-0.1
2.9
67.5
43.9
Minor BPS
59.3
0.27
1.6
68.42
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024609
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034690
70289552 - 70301911
12360