Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70299036_70299961_R

Intron Information:

Intron Rank:

143638

Intron Class:

major

Intron Phase:

Intron Coordinates:

70299036 - 70299961

Intron Length:

926

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCTGTT

5'SS Class:

major

3'SS Sequence:

CCTTTCCTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTCTAATAAAGT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.7

0.63

1.1

77.9

36.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

81.9

0.72

0.7

77.1

24.9

Minor 5ss

0.03

2.9

75.5

40.6

Minor BPS

45.6

-0.2

2.3

69.75

46.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032717

70289552 - 70301911

12360

ENSAPLT00000029619

70293439 - 70301911

8473