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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70300158_70301795_R

Intron Information:

Intron Rank:
143639
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70300158 - 70301795
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCTAC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TGGCCCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
60.4
41.6
Major BPS
72.8
0.57
1
81
30.3
Major PPT
86.5
0.82
0.6
85.2
22.1
Minor 5ss
48.6
-0.1
2.9
67.5
43.9
Minor BPS
60.9
0.32
1.8
68.71
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024609
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032717
70289552 - 70301911
12360
ENSAPLT00000029619
70293439 - 70301911
8473