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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7036217_7036364_R

Intron Information:

Intron Rank:
144140
Intron Class:
major
Intron Phase:
Intron Coordinates:
7036217 - 7036364
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTACAAAA
5'SS Class:
major
3'SS Sequence:
AATCACGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATTCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
69
37.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
68.2
0.41
1
62.6
43.1
Minor 5ss
34.7
-1.7
2.7
41
44.9
Minor BPS
49.1
0.01
2.2
71.75
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024798
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031644
7035227 - 7036635
1409