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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70465462_70466979_R

Intron Information:

Intron Rank:
152001
Intron Class:
major
Intron Phase:
Intron Coordinates:
70465462 - 70466979
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTGCACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTCTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
75.6
0.58
0.9
68.2
37.2
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
57.5
0.32
1.9
82.07
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029342
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032669
70464452 - 70503811
39360