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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70467139_70482853_R

Intron Information:

Intron Rank:
151999
Intron Class:
major
Intron Phase:
Intron Coordinates:
70467139 - 70482853
Intron Length:
15715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
AGTTATATGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
75.8
0.64
1
65.8
41
Major PPT
66.7
0.38
1
62.1
37.8
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
48.2
-0
1.7
67.87
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029342
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024134
70466831 - 70482888
16058
ENSAPLT00000032669
70464452 - 70503811
39360