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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70483234_70484690_R

Intron Information:

Intron Rank:
152003
Intron Class:
major
Intron Phase:
Intron Coordinates:
70483234 - 70484690
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TACTCTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
79.8
0.67
0.8
74.8
34.7
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
59
0.36
1.7
74.15
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029342
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032669
70464452 - 70503811
39360