About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7053587_7064280_R

Intron Information:

Intron Rank:
150555
Intron Class:
major
Intron Phase:
Intron Coordinates:
7053587 - 7064280
Intron Length:
10694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
CCCACATGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.9
37.5
Major BPS
59.7
0.24
1
67
29.8
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
43.3
-0.7
2.9
54.6
45
Minor BPS
48.4
-0
1.8
62.64
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028491
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047324
7049009 - 7064283
15275