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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70614195_70646564_R

Intron Information:

Intron Rank:
137288
Intron Class:
major
Intron Phase:
Intron Coordinates:
70614195 - 70646564
Intron Length:
32370

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTTTTCTACACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.99
0.9
77.7
37
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
84.4
0.77
0.8
80.7
30.2
Minor 5ss
32.1
-2
4.2
48.5
47.7
Minor BPS
59.4
0.29
2.1
78.35
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021370
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021620
70613968 - 70649929
35962