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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70795796_70828583_R

Intron Information:

Intron Rank:
148470
Intron Class:
major
Intron Phase:
Intron Coordinates:
70795796 - 70828583
Intron Length:
32788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCTTCCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
84
0.77
0.6
80.7
24.7
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
57
0.21
1.9
75.09
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027252
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038252
70795756 - 70829549
33794