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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70828706_70828936_R

Intron Information:

Intron Rank:
148471
Intron Class:
major
Intron Phase:
Intron Coordinates:
70828706 - 70828936
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAACTATG
5'SS Class:
major
3'SS Sequence:
TGTTAACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
75.5
40.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.9
0.54
0.9
67.3
39
Minor 5ss
46.6
-0.3
2.6
60.3
38.4
Minor BPS
56
0.19
1.8
71.46
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027252
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038252
70795756 - 70829549
33794