About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70829118_70831792_R

Intron Information:

Intron Rank:
148466
Intron Class:
major
Intron Phase:
Intron Coordinates:
70829118 - 70831792
Intron Length:
2675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTTTCTCTGAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
62
0.3
1
62.3
30.4
Major PPT
75.2
0.57
1
76.1
32.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
55
0.01
1.9
68.48
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027252
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019262
70828910 - 70849314
20405