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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70831920_70848034_R

Intron Information:

Intron Rank:
148467
Intron Class:
major
Intron Phase:
Intron Coordinates:
70831920 - 70848034
Intron Length:
16115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGTGTATC
5'SS Class:
major
3'SS Sequence:
CCTTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AAATATTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74
36.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.7
0.69
0.8
75.1
33
Minor 5ss
40.5
-1.1
2.7
45.5
42.9
Minor BPS
52.1
0.15
1.8
69.54
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027252
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019262
70828910 - 70849314
20405