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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70880454_70881504_R

Intron Information:

Intron Rank:
130866
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70880454 - 70881504
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGTACAC
5'SS Class:
weak_major
3'SS Sequence:
ATTTATCTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.3
50.9
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
1
74.3
40.5
Minor 5ss
27.3
-2.6
3
33.9
41.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043685
70879735 - 70927653
47919
ENSAPLT00000042068
70879735 - 70927653
47919
ENSAPLT00000022404
70879735 - 70909255
29521
ENSAPLT00000018170
70879735 - 70907929
28195