About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70881036_70897524_R

Intron Information:

Intron Rank:
130888
Intron Class:
major
Intron Phase:
Intron Coordinates:
70881036 - 70897524
Intron Length:
16489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATGCATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.4
0.59
0.8
69.7
36.7
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
62.5
0.47
1.7
76.94
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039870
70879735 - 70927653
47919