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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70881557_70887930_R

Intron Information:

Intron Rank:
130867
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70881557 - 70887930
Intron Length:
6374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCACTGTGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTTCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
58.3
0.19
1.1
53.1
40.2
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
72.7
0.71
1.3
76.28
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018170
70879735 - 70907929
28195
ENSAPLT00000042068
70879735 - 70927653
47919
ENSAPLT00000022404
70879735 - 70909255
29521