About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70881557_70897524_R

Intron Information:

Intron Rank:
130900
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
70881557 - 70897524
Intron Length:
15968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCACTGTGAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AATTTCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
58.3
0.19
1.1
53.1
40.2
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
72.7
0.71
1.3
76.28
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043685
70879735 - 70927653
47919