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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70897382_70897524_R

Intron Information:

Intron Rank:
130869
Intron Class:
major
Intron Phase:
Intron Coordinates:
70897382 - 70897524
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTCAACTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATGTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
69.5
0.44
0.9
59.5
41.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
52.8
0.17
2.3
80.63
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042068
70879735 - 70927653
47919
ENSAPLT00000022404
70879735 - 70909255
29521
ENSAPLT00000018170
70879735 - 70907929
28195