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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70897628_70904333_R

Intron Information:

Intron Rank:
130870
Intron Class:
major
Intron Phase:
Intron Coordinates:
70897628 - 70904333
Intron Length:
6706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACGTA
5'SS Class:
major
3'SS Sequence:
GACTTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTTTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1
67.4
37.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73
0.52
0.9
69.8
36.3
Minor 5ss
45.4
-0.5
3.3
63.9
47.7
Minor BPS
57.1
0.3
2
80.21
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038861
70887931 - 70907929
19999
ENSAPLT00000022404
70879735 - 70909255
29521
ENSAPLT00000043685
70879735 - 70927653
47919
ENSAPLT00000018170
70879735 - 70907929
28195
ENSAPLT00000042068
70879735 - 70927653
47919
ENSAPLT00000039870
70879735 - 70927653
47919