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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70905761_70906286_R

Intron Information:

Intron Rank:
130872
Intron Class:
major
Intron Phase:
Intron Coordinates:
70905761 - 70906286
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTTC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTCCCCCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
68.9
36.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
64
0.32
1
65.3
29.4
Minor 5ss
46.7
-0.3
3.2
66.9
44.7
Minor BPS
51.3
0.04
2
72.03
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017645
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038861
70887931 - 70907929
19999
ENSAPLT00000022404
70879735 - 70909255
29521
ENSAPLT00000018170
70879735 - 70907929
28195