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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70926147_70980005_F

Intron Information:

Intron Rank:
151160
Intron Class:
major
Intron Phase:
Intron Coordinates:
70926147 - 70980005
Intron Length:
53859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
65.7
0.57
2
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031207
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030026
70925867 - 71052336
126470