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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_70931110_70980005_F

Intron Information:

Intron Rank:
151162
Intron Class:
major
Intron Phase:
Intron Coordinates:
70931110 - 70980005
Intron Length:
48896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATTCTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
83.6
28.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
81.3
0.7
0.8
73.8
41.4
Minor 5ss
46.3
-0.4
3.2
70
40.4
Minor BPS
65.7
0.57
2
84.68
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031207
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046996
70930320 - 71052336
122017