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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_71106189_71126164_F

Intron Information:

Intron Rank:
134708
Intron Class:
major
Intron Phase:
Intron Coordinates:
71106189 - 71126164
Intron Length:
19976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTTATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
41.9
Major BPS
80
0.75
1
78.6
31
Major PPT
81
0.7
0.9
77.8
34
Minor 5ss
34.5
-1.8
3.3
44.8
43.4
Minor BPS
64.7
0.46
1.6
75.35
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022441
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045408
71105866 - 71130516
24651