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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_71126218_71130297_F

Intron Information:

Intron Rank:
134709
Intron Class:
major
Intron Phase:
Intron Coordinates:
71126218 - 71130297
Intron Length:
4080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
CTTTTGTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
72.5
0.51
1
69
40.8
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
53.7
0.11
2.2
71.44
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022441
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045408
71105866 - 71130516
24651