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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7129418_7132884_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7129418 - 7132884
Intron Length:
3467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATATGTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AATTCTTTATCT
Flanking Amino Acid:
KRVSRKDVTVISEQSKDDEQ
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
80.8
34.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
66.6
0.37
0.9
60.8
39.8
Minor 5ss
57.8
0.26
2.7
78.1
36.5
Minor BPS
70.8
0.73
1.5
83.59
37.2

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231