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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7133063_7135076_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7133063 - 7135076
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATAATG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAG
U12 Branch Point Sequence:
CGCCACTTAGCT
Flanking Amino Acid:
PQRSDQDLLELIESTCTMDE
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
71.1
38.9
Major BPS
48.9
-0
1.5
47
38.5
Major PPT
93.4
0.98
0.7
92.3
26.6
Minor 5ss
38.9
-1.3
3.1
50
40.2
Minor BPS
48.7
-0
1.8
63.33
46.2

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231