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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_71378461_71400092_R

Intron Information:

Intron Rank:
145179
Intron Class:
major
Intron Phase:
Intron Coordinates:
71378461 - 71400092
Intron Length:
21632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
GCTTTAATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.4
0.64
0.9
74.6
39
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
91.2
1.37
0.9
101.2
25

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025540
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039556
71378321 - 71406350
28030