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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7138640_7140277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7138640 - 7140277
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAACATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
QSAKKPKANHLDGSESQRQW
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.7
0.49
0.9
67.5
37.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231