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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7140368_7141000_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7140368 - 7141000
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CATCGCTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTATCTTAACTA
Flanking Amino Acid:
QNTFPGLDKEELRDVLQEHN
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
63.1
0.3
0.9
55.3
39.8
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
52.1
0.06
1.9
67.35
40

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231