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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7149817_7150977_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7149817 - 7150977
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTTGTTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTAAACA
Flanking Amino Acid:
NIEQPSILNKSLELKPYQKI
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1
66.3
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
41
-1
3.2
55.3
48.9
Minor BPS
71
0.66
1.6
82.25
33.1

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231