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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7152317_7153923_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7152317 - 7153923
Intron Length:
1607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGATGTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAT
Flanking Amino Acid:
HLIVVPASTLDNWIREVHLW
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.4
0.59
1
69
41.8
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
72.6
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231
ENSAPLT00000028644
7120476 - 7162657
42182