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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7153984_7154194_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7153984 - 7154194
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAGT
5'SS Class:
major
3'SS Sequence:
TGTCCTTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTCCTTCTATA
Flanking Amino Acid:
CPELNVLFYYGSQEDRKHLR
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71.3
40.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
78.4
0.64
0.8
73
32
Minor 5ss
28.7
-2.4
3.2
36.5
42.7
Minor BPS
48
-0.1
1.8
61.69
38.1

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231