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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7159855_7160806_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7159855 - 7160806
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTTCCTAAGGC
Flanking Amino Acid:
RLDGKTQISDRIHLIDQFNT
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
74
36.6
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
81.3
0.7
0.8
76.5
32.3
Minor 5ss
40.6
-1
2.8
52.4
44.8
Minor BPS
54.2
0.11
2.2
74.03
43

Associated Gene:

Gene:
SMARCAD1
Ensembl Gene ID:
ENSAPLG00000004630
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028644
7120476 - 7162657
42182
ENSAPLT00000027477
7120476 - 7162082
41607
ENSAPLT00000004820
7126934 - 7162164
35231