Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7164129_7164671_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7164129 - 7164671

Intron Length:

543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

CCCTTTCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

TTAAAACTAACT

Flanking Amino Acid:

GDNKWLVGKSVTWADFYWDV

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

80.3

34.1

Major BPS

64.3

0.36

71.3

30.3

Major PPT

72.8

0.51

0.9

66.1

34.6

Minor 5ss

39.1

-1.2

3.1

61.3

Minor BPS

47.8

-0

2.1

73.51

Associated Gene:

Gene:

HPGDS

Ensembl Gene ID:

ENSAPLG00000004536

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045890

7163307 - 7190019

26713

ENSAPLT00000004679

7156072 - 7190019

33948