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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7210500_7211587_F

Intron Information:

Intron Rank:
124929
Intron Class:
major
Intron Phase:
Intron Coordinates:
7210500 - 7211587
Intron Length:
1088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
TTCCTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATGTTTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
81.5
0.71
0.8
72.8
37.5
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
46.3
-0.2
1.9
62.25
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041755
7208822 - 7212324
3503