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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72169711_72172609_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72169711 - 72172609
Intron Length:
2899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCAAATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
CCCCTCTCAAAT
Flanking Amino Acid:
PNWTGPDCSNEICSVDCGTH
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
68.7
0.42
1
59.5
39.8
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
47.4
-0.1
1.7
58.13
44.8

Associated Gene:

Gene:
TENM3
Ensembl Gene ID:
ENSAPLG00000016426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017151
72167630 - 72248546
80917
ENSAPLT00000048241
72167630 - 72248546
80917