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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7217704_7221104_F

Intron Information:

Intron Rank:
124920
Intron Class:
major
Intron Phase:
Intron Coordinates:
7217704 - 7221104
Intron Length:
3401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGCATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
GGACCCTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
77
0.61
0.9
67.1
43.4
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
64
0.52
1.3
71.32
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017277
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022608
7208822 - 7221543
12722