Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72197224_72204178_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

72197224 - 72204178

Intron Length:

6955

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTGT

5'SS Class:

strong_major

3'SS Sequence:

TACCAATGCATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TTTTTCTTACCA

Flanking Amino Acid:

EDSPIIPETQVLHEETTIPG

Intron Amino Acid Position:

468

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

72.8

39.1

Major BPS

77.7

0.69

83.3

27.7

Major PPT

56.3

0.14

37.7

Minor 5ss

37.8

-1.4

3.5

55.9

48.3

Minor BPS

76.8

0.84

1.5

86.69

32.1

Associated Gene:

Gene:

TENM3

Ensembl Gene ID:

ENSAPLG00000016426

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017151

72167630 - 72248546

80917

ENSAPLT00000048241

72167630 - 72248546

80917