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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72204447_72205034_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72204447 - 72205034
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTCTATATTT
Flanking Amino Acid:
QRVYGLSEAVVSVGYEYESC
Intron Amino Acid Position:
557

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.6
39.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
42.5
-0.8
3.1
54.1
44.6
Minor BPS
55.6
0.25
1.9
77.48
39.3

Associated Gene:

Gene:
TENM3
Ensembl Gene ID:
ENSAPLG00000016426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048241
72167630 - 72248546
80917
ENSAPLT00000017151
72167630 - 72248546
80917