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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72208434_72208832_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
72208434 - 72208832
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCCACCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTTTTTTACTT
Flanking Amino Acid:
SGNVTSVLELRNKDFRHSSN
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
55.7
0.13
1.1
53.2
36.1
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
63.8
0.51
1.6
78.3
39.3

Associated Gene:

Gene:
TENM3
Ensembl Gene ID:
ENSAPLG00000016426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017151
72167630 - 72248546
80917