About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72208854_72214024_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72208854 - 72214024
Intron Length:
5171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCTTTTTACA
Flanking Amino Acid:
LELRNKDFRHSSNPAHRYYL
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
91.2
0.93
0.6
86.8
24.1
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
56.6
0.2
1.6
67.83
38.5

Associated Gene:

Gene:
TENM3
Ensembl Gene ID:
ENSAPLG00000016426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017151
72167630 - 72248546
80917