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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72233434_72238227_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72233434 - 72238227
Intron Length:
4794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTAAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTGTTTTAAAA
Flanking Amino Acid:
KVNVFGRKLRVNGRNLLSVD
Intron Amino Acid Position:
1254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
72.7
44.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
65
0.34
1.2
68.7
40.4
Minor 5ss
42.6
-0.8
2.9
49.5
46.5
Minor BPS
66.3
0.51
1.5
75.65
35.9

Associated Gene:

Gene:
TENM3
Ensembl Gene ID:
ENSAPLG00000016426
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048241
72167630 - 72248546
80917
ENSAPLT00000017151
72167630 - 72248546
80917