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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7223691_7224346_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7223691 - 7224346
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGATAC
5'SS Class:
major
3'SS Sequence:
CTTTAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTCCTTTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.8
32.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.9
0.63
0.9
70.9
38.4
Minor 5ss
40.8
-1
3.1
56.7
42.1
Minor BPS
71.5
0.75
1.4
82.63
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004330
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024565
7223243 - 7253134
29892