Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_7224505_7230479_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

7224505 - 7230479

Intron Length:

5975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGGAAG

5'SS Class:

major

3'SS Sequence:

TGCACTTACACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTGCACTTACAC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

63.6

42.3

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

66.9

0.38

60.8

39.3

Minor 5ss

33.8

-1.8

3.2

45.2

43.7

Minor BPS

48.5

-0.1

1.9

62.3

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048099

7224347 - 7253134

28788