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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72285641_72287976_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72285641 - 72287976
Intron Length:
2336

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
RMFDLAGIVYREFKPKCNKI
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.9
72.2
42.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
19.4
-3.5
3.9
28.4
43.8
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
DCTD
Ensembl Gene ID:
ENSAPLG00000002602
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002640
72285562 - 72304472
18911