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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_72288074_72289599_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72288074 - 72289599
Intron Length:
1526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATGACCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATAATCCTAACA
Flanking Amino Acid:
NECAKLIIQAGIKEIIFMSD
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.5
0.42
0.9
59.1
42.2
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
56.9
0.21
1.7
68.28
37.3

Associated Gene:

Gene:
DCTD
Ensembl Gene ID:
ENSAPLG00000002602
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002640
72285562 - 72304472
18911